Publications

  • Zafferani, M., Haddad, C., Luo, L., Davila-Calderon, J., Yuan-Chiu, L., Shema Mugisha, C., Monaghan, A.G., Kennedy, A.A., Yesselman, J.D., Gifford, R.R.,  Tai, A.W., Kutluay, S.B.,  Li, M.,  Brewer, G.,Tolbert, B.S., Hargrove, A.E. 2020. Amilorides inhibit SARS-CoV-2 replication by in vitro targeting of RNA structures. bioRxiv. DOI:
  • Wang, Q., Gao, H., Clark, K. M., Tang, P., Harlan, G. H., Kutluay, S. B., DeSelm, C. J., Presti, R. M., Shan, L. 2020. CARD8 inflammasome mediates pyroptosis of HIV-1-infected cells by sensing viral protease activity. bioRxiv. DOI: 10.1101/2020.09.25.308734 Link to article
  • Puray-Chavez, M., Tenneti, K., Vuong, H. R., Lee, N., Liu, Y., Horani, A., Huang, T., Gunsten, S. P., Case, J. B., Yang, W., Diamond, M. S., Brody, S. L., Dougherty, J., Kutluay, S. B. 2020. The translational landscape of SARS-CoV-2 and infected cells. bioRxiv. DOI: 10.1101/2020.11.03.367516 Link to article
  • Shema Mugisha, C., Vuong, H.R., Puray-Chavez, M. Kutluay, S.B. 2020. A simplified Q-RT-PCR assay for monitoring SARS-CoV-2 growth in cell culture. mSphere 5 (5) e00658-20; DOI: 10.1128/mSphere.00658-20 Link to article
  • Eschbach, J. E., Elliott, J. L., Li, W., Zadrozny, K. K., Davis, K., Mohammed, S., Lawson, D. Q., Pornillos, O., Engelman, A.N., Kutluay, S. B. 2020. Capsid lattice destabilization leads to premature loss of the viral genome and integrase enzyme during HIV-1 infection. Journal of Virology. 95 (2) DOI: 10.1128/JVI.00984-20 Link to article
  • Elliott, J.L. and Kutluay, S.B. 2020 Going beyond integration: The emerging role of HIV-1 integrase in virion morphogenesis. Viruses, 12(9), 1005. (Invited review). Link to article
  • Elliott, J. L., Eschbach, J. E., Koneru, P., Li, W., Puray-Chavez, M., Townsend, D., Lawson, D. Q., Engelman, A.N., Kvaratskhelia, M., Kutluay, S. B. 2020 Integrase-RNA interactions underscore the critical role of integrase in HIV-1 virion morphogenesis. eLife. 9:e54311 DOI: 10.7554/eLife.54311. ELife Link to article
  • Kutluay, S.B.*, Emery, A., Penumutchu, S., Townsend, D., Tenneti, K., Madison, M. K., Stukenbroeker, A. M., Powell, C., Jannain, D., Tolbert, B. S., Swanstrom, R. I., Bieniasz, P. D.* 2019. Genome wide analysis of hnRNP binding to HIV-1 RNA reveals a key role for hnRNP H1 in alternative viral mRNA splicing. J. Vir. 93 (21) e01048-19. (*co-corresponding) Link to article
  • Bieniasz, P. D. and Kutluay, S. B. 2018. CLIP-related methodologies and their application to retrovirology. Retrovirology 15(1):35.
  • Williams, G. D., Townsend, D., Wylie, K. M., Kim, P. J., Amarasinghe, G. K., Kutluay, S. B., Boon, A. C. M. 2018. Nucleotide resolution mapping of influenza A virus nucleoprotein-RNA interactions reveals RNA features required for virus replication. Nat. Commun. 9(1): 465. Link to article
  • Madison, M. K., Lawson, D. Q., Elliott, J., Ozanturk, A. N., Koneru, P. C., Townsend, D., Errando, M., Kvaratskhelia, M., Kutluay, S.B. 2017. Allosteric integrase inhibitors lead to premature degradation of the viral RNA genome and integrase in target cells. Journal of Virology 91(17). pii: e00821-17. Link to article
  • Kessl, J. J.*, Kutluay, S. B.*, Townsend, D., Slaughter, A., Larue, R. C., Shkriabai, N., Bakouche, N., Fuchs, J. R., Bieniasz, P. D., Kvaratskhelia, M. 2016. HIV-1 integrase binds the viral RNA genome and is essential during virion morphogenesis. Cell 166(5): 1257-1268 (*equal contribution). Link to article
  • York, A.*, Kutluay, S.B.*, Errando, M., Bieniasz, P.D. 2016. The RNA binding specificity of human APOBEC3 proteins resembles that of HIV-1 nucleocapsid. PLoS Pathogens 12(8):e1005833 (*equal contribution). Link to article
  • Kutluay, S.B. and Bieniasz, P.D. 2016. Analysis of HIV-1 Gag-RNA interactions by in cells and virions by CLIP-seq. In V. R. Prasad & G. V. Kalpana (Eds.) Methods Mol Biol. 1354:119-31 (co-corresponding authors). Link to article
  • Kutluay, S.B., Zang, T., Blanco-Melo, D., Powell, C., Jannain, D., Errando, M., Bieniasz, P.D. 2014. Global changes in the RNA binding specificity of HIV-1 Gag regulate virion genesis. Cell 159(5): 1096-109. Link to article
  • Kane, M., Yadav, S., Bitzegeio, J., Kutluay, S.B., Zang, T., Wilson, S., Schoggins, J., Rice, C., Yamashita, M., Hatziioannou, T., Bieniasz, P.D. 2013. Mx2 is an interferon-induced inhibitor of HIV-1 infection. Nature 502(7472): 563-6. Link to article
  • Soll, S.J., Wilson, S.J., Kutluay, S.B., Hatziioannou, T., Bieniasz, P.D. 2013. Assisted evolution enables HIV-1 to overcome a high TRIM5α-imposed genetic barrier to rhesus macaque tropism. PLoS Pathogens 9(9): e1003667. Link to article
  • Kutluay, S.B., Perez-Caballero, D., Bieniasz, P.D. 2013. Fates of retroviral core components during unrestricted and TRIM5-restricted Infection. PLoS Pathogens 9(3): e1003214. Link to article
  • Wilson, S.J., Schoggins, J.W., Zang, T., Kutluay, S.B., Jouvenet, N., Alim, M.A., Bitzegeio, J., Rice, C.M., Bieniasz, P.D. 2012. Inhibition of HIV-1 particle assembly by 2′,3′-cyclic-nucleotide 3′-phosphodiesterase. Cell Host Microbe 12(4): 585-97. Link to article
  • Kutluay, S.B., and Bieniasz, P.D. 2010. Analysis of the initiating events in HIV-1 particle assembly and genome packaging. PLoS Pathogens 6(11):e1001200. Link to article
  • Kutluay, S.B., and Triezenberg, S.J. 2009. Regulation of chromatin during herpes simplex virus type-1 infections. Biochimica et Biophysica Acta 1790(6):456-66. Link to article
  • Kutluay, S.B., and Triezenberg, S.J. 2009.Regulation of histone deposition on the herpes simplex virus type-1 genome during lytic infection. Journal of Virology 83(11):5835-45. Link to article
  • Kutluay, S.B., DeVos, S., Klomp, J.E., Triezenberg, S.J. 2009. Transcriptional coactivators are not required for herpes simplex virus type-1 immediate early gene expression during lytic infection. Journal of Virology 83(8): 3436-49. Link to article
  • Kutluay, S.B., Doroghazi, J., Roemer, M.E., Triezenberg, S.J. 2008. Curcumin inhibits herpes simplex virus immediate-early gene expression by a mechanism independent of p300/CBP histone acetyltransferase activity. Virology 373 (2): 239-47. Link to article

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